Sentence examples for site patterns from inspiring English sources

Our results suggest summary measures of phylogenetic information content, illuminate the correlation between site patterns in sequences or traits of related organisms, and provide heuristics for experimental design and reconstruction of phylogenetic trees.

Transformants were selected based on restriction site patterns and verified by DNA sequencing (Macrogen).

The maximum likelihood phylogenetic analysis of the amino acid sequence was established using the following parameters: i) 290 characters, ii) 229 site patterns, iii) 13 constant site patterns, iv) model of substitution  =  JTT, v) 1663740 quartets were analysed with 146464 unresolved quartets, vi) 1000 puzzling steps were used for statistical analysis.

Therefore, we searched for the MAPK docking site patterns on HIV sequences gathered from the Los Alamos National Lab LANLL) HIV Sequence Database (http://www.hiv.lanl.gov/), which contains thousands of sequences spanning multiple subtypes and recombinant forms.

To determine the use of docking sites in the human proteome, we scanned proteins with documented phosphorylation sites [19] and ERK1/2 substrates [19] with the Da and Db docking site patterns, filtering out pattern hits falling in Pfam domains [20] in a manner similar to the one used by the ELM Resource.

The 52-OTU matrix had 1,855 unique site patterns; the 273-OTU matrix had 2,510 unique site patterns.

We next addressed the question of what caused this shift in binding site patterns.

Based on their splice site patterns these exons could be incorporated in a mutually exclusive manner.

The data for all four primates can be summarized by 61 distinct site patterns [ 5].

Homoplasious site patterns in a DNA sequence alignment can systematically bias molecular divergence time estimates.

We set the sample size as the number of site patterns in the alignment.