Sentence examples for site in the reference from inspiring English sources

If a TE insertion site in the reference genome was located within a genic region or a 500 bp flanking genic region, then genes were defined as TE-affected genes in the query genome.

Each read was aligned to only a single best homologous site in the reference sequence.

We denote the position of a site in the reference genome by i∈[1,…, n] where n is the genome length.

Each read was only aligned to one site in the reference sequence; if reads were aligned to different references sequences then the reads were discarded.

Using the PWM model, it identifies the highest scoring site in the reference sequence, and then realigns it (without gaps) to the other sequences.

Methylation status of each CpG site was specified as the number of reads corresponding to mC (denoted as x mCpG) divided by the total number of reads covering each cytosine site in the reference (denoted as x mCpG + x CpG).

In contrast, little activity was observed at the Northeast Clinic site in El Paso, the reference site.

For each cluster, values of the variables are averaged over sites that fall within the cluster and then fingerprints are developed by plotting spider diagrams with the log of the ratio of the median value for each variable in the cluster of interest to the median value for sites in the reference cluster (Wayland et al. 2003).

Polymorphic markers were mapped to the reference genome first identifying perfect matches to potential RAD marker sites in the reference genome and then searching for single mismatches.

Predicted models in the real data contain besides contributions from sites in the reference species also contributions from yet unannotated sites present in the orthologs.

For the synthetic data the correct motif model was based on the embedded motif sites, for the real data on the annotated motif sites in the reference species (E. coli or S. cerevisiae).