Sentence examples for simultaneous alignment from inspiring English sources

An experiment based on all identified DS cases listed in Table S4 and Table S5 was performed to determine the simultaneous alignment quality of TM-align on both domains of DSCO pairs.

The updated sequence was submitted to GenBank [ U79413] The protein sequences of the bovine, human and mouse BPI-like genes were aligned using the SATCHMO (Simultaneous Alignment and Tree Construction using Hidden Markov mOdels) [ 34] with a window size of 13.

One potential approach to this issue is simultaneous alignment and tree estimation.

Additionally, we conducted simultaneous alignment and topology inference in a Bayesian framework using BAli-Phy for both the Apis and Solenopsis OBPs (AmOBPs; [4] and SiOBPs, respectively).

Environmental sampling holds the key to many focal questions in mycology, and simultaneous alignment and tree estimation, as performed by SATé, can be a highly efficient companion in that pursuit.

One novel approach is simultaneous alignment and tree estimation, such as that performed by SATé, a recently released program [21] [22] that unites the inference of optimal multiple alignments and phylogenetic trees into a single process, thereby eliminating manual examination of MSAs for molecular ecological inference.

Both forward and reverse complements of the sequence words are tested in each alignment and up to two simultaneous alignments to the PWM are tested.

To overcome this problem, in [14], a joint correction scheme for simultaneous range alignment and phase adjustment was proposed based on a two-order polynomial model of the translational range history, and a novel coarse estimation of both velocity and acceleration was also developed to accelerate the motion estimation.

Computing a simultaneous multiple alignment across all subtypes for the HA segment is challenging for several reasons including: 1) high sequence-variability between subtypes, 2) large number of sequences that need to be aligned and 3) the need to correct for biased representation of the subtypes in the sequence databases.

This allowed us to compare the copies present in the two homologues in a simultaneous ClustalW alignment.

This was shown by simultaneous clustalW alignments of the repeats of the four chromosomes tested (1, 19, and two chromosome 5 homologues).