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The sensitivity analyses were based on 10 simulations with each combination of parameter values.
The number of simulations with each configuration was N k =1000.
A 130-ns simulation of the polymer in a large water box was run before initiating 50 ns simulations with each of the crystal surfaces.
Folding free-energy landscapes of a mini-protein, chignolin, were calculated by using multicanonical molecular dynamics simulations with each of four AMBER generalized Born methods to compare the accuracies of these methods.
Our strategy was to randomly sample 137 values (the total number of mice examined in the dataset of Figure 2) from the Markov Process simulations with each sample assigned to one of the time points for which we have observed data.
The f estimates for the simulations with each category alone were not significantly different from 0.5 (i.e., the value under which the sequences were generated).
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The performance of the proposed algorithm EEF has been evaluated by conducting extensive discrete event simulation with each containing a total number of 36 SSs.
The modeling software used in this work was Microsoft Excel and Palisade @RISK, and we ran the simulations with 5,000 iterations each.
We observed that the local minimizers from 200 random simulations agreed with each other and also with the true flux values, the global solution.
HS-AFM imaging and such simulations agreed with each other in that several stable association patterns occurred and were dynamically adopted.
Ten simulations with 10 photon packets each have been utilized in each case.
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