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In order to stabilize the temperature at 300 K, the simulations began with 20 ps of temperature scaling[28] using a 0.5 fs time step.
All simulations began with a plasmid free cell population to which all plasmid types were invaders.
Simulations began with 2 initial guards and 60 nestmate foragers and 20 non-nestmate invaders arriving per minute.
Model simulations began with all elements "ON" and continued until steady state was reached: this situation corresponds to "wild-type" simulations.
Our simulations began with several generations of neutral mixing, emulating laboratory procedures that use inbred founder lines to create larger experimental populations with increased genetic variation and reduced linkage disequilibrium (e.g., Turner and Miller 2012).
During early development of the ISWBCs attention focused primarily on Set A. Once satisfactory simulations began to be achieved, the targeted attributes were expanded to those in Set B. Final validations focused on the combined set.
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All simulations begin with zero particles within the model domain.
The simulations begin in the first generation after a point mutation arises in the population.
In the following investigations, simulations begin from the sunrise time until the sunset time.
The simulations begin with initial low-density nitrogen plasma, which extends with uniform density through a grounded cylindrical chamber.
These coupled electrochemical-mechanical simulations begin to yield insight into the partitioning of volume change between reducing pore space and macroscopically swelling the electrode.
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