WholeCellSimDB provides a utility to convert simulations stored using the MATLAB MAT-File binary format described in Karr et al.
An operator button to initiate the simulation and store the results within the sensing mesh.
As indicated in the Methods, this results in a network that is below its storage capacity In the first simulation with stored representations, we analyzed network activity in response to stimuli obtained by morphing between 20 sets of 2 stored patterns (40 out of 160 stored patterns).
The memory architecture of the GPU can be used both as container for simulation data stored on the graphics card and as floating-point code target, providing an effective means for the manipulation of atomistic or molecular data on the GPU.
The inferred graphs in the iterations of the MCMC simulation are stored in the form of adjacency matrices.
The atomic coordinates were saved to disk every picosecond, and after the simulation the stored 100 structures were all energy minimized to remove effects due to the high temperature.
Studying these haplotype patterns can be difficult with existing forward-in-time simulators because detailed information about the mosaic haplotype structure of individuals is not readily available, and must be inferred from the output sequences of the simulation and/or stored recombination event data.
One advantage of this software architecture is that all relevant data for running simulations is stored in one Access® database which contains different tables storing location, weather, crop, and soil texture variables.
The results of these simulations are stored in look-up tables as reference data in the MVM, drawn upon as necessary according to the particular combinations of inputs for specific populations in the scenario chosen by the user (see Additional files 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 and 16).
Other limitations include the inability to generate a three-dimensional visualization, no standard mean to save the results of simulations, or to store the model geometry within the results.
