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Using the exact data simulation script subsequently to simulate data with the sample size advertised by Mx would not result in a power of 80% since the groups with N k < q observations are not represented in the simulated data and thus do not contribute to the power.
calyx.mdl: the main simulation script.
A sequential quadratic programming method is selected to deal with the constrained design problems, while the objective functions are evaluated by running the three-dimensional simulation script of COMSOL™ under the MATLAB™ environment.
STF.growth.par - simulation script calculating the [Ca2+] profiles and facilitation growth curves for a five-pulse stimulus train (at 100 Hz), shown in Figs. 1 and 2, B-D. 1. STF.decay.stage1.par - generates the [Ca2+] files corresponding to the different interspike interval values.
Gawk [32] is used to run the simulation script files and analyze the generated trance file.
The PERL lava flow simulation script produces 3 output files: lava_flow_stats.# This file is a compilation of all simulated lava flows (where '#' refers to the initial run number).
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The simulation scripts have the additional purpose of serving as tutorial examples for the construction of cortical networks with GENESIS.
We provide here some analysis and simulation scripts that used to test our method through computer simulations, in vitro recordings, theoretical and numerical methods.
The ip3r folder contains mesh data and simulation scripts for the IP3 receptor model described in the paper, and the AD folder contains data and scripts for Anomalous Diffusion simulation.
It is my hope that this short tutorial and the example simulation scripts can provide a head start for a graduate student or postdoc who is beginning a cortical modeling project.
Moreover, we examined a methodological aspect of the MOSAIC computer program, i.e. the variability in RSAP due to inherent variations between replicates of random landscape simulation scripts using the program MOSAIC.
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