Dynamic modeling and simulation are accomplished using MATLAB Simulink™ 7.2.
After zeroing down on the technique for modeling the simulation was accomplished.
By means of building a mathematical mode,l the semi-physical simulation was accomplished.
Analysis of the kinetic model, its fitting to experimental data and simulation of verified model is accomplished by means of following calculation modules: "Ode solver", "Implicit solver", "Explicit solver", "Bifurcation analysis", "Fitter".
The computer simulations are accomplished for different length diameter ratios (L/D).
All energy minimization and MD simulations were accomplished by GROMACS4.0 software package [ 77, 78] using the GROMOS96 43a1 force field [ 79, 80].
In the present work, a further, more sound validation of the new model and simulation code is accomplished to govern two-dimensional systems.
Visualization of simulation trajectories is accomplished using VEGA ZZ [47].
Despite the fact that external input nodes are Boolean nodes, for any given simulation, this is accomplished by placing the external input nodes on a cycle that yields a desired % ON (see the Using attractors to characterize node activation section).
