Sentence examples for simple sequence repeat analysis from inspiring English sources

rDNA spacers data and simple sequence repeat analysis seem to indicate that the leafy cardoon is genetically closer to wild germplasm of Spain rather than wild germplasm of Italy or Greece, thus supporting the view that the leafy cardoon was domesticated in the western part of the Mediterranean (Sonnante et al., 2006 a, 2007).

ACG isolated, identified and genotyped the environmental Bairrada wine yeast strains, PP contributed to data analysis, DS participated in the design of the study, provided the Vinho Verde strains and performed the simple sequence repeats analysis.

Flow cytometry, chromosome counts and SSR marker (Simple Sequence Repeats) analysis facilitated the identification of six different haploid lines (2 n = x = 9), one aneuploid line (2 n = 2 x+4 = 22) and one doubled haploid plant (2 n = 2 x = 18) of 'Clemenules' clementine.

Similar conclusions were reported for expressed sequence tag (EST -simple sEST -simpleeat analysequence1 switchgrepeatopulanalysiswhere the upland and lofland accessions clustered into separate groups and also demonstrated clustering of populations based on their geographic origins (Narasimhamoorthy et al. 2008).

We use an AFLP (amplified fragment length polymorphism) analysis, based on the selective polymerase chain reaction (PCR) amplification of restriction fragments from a total digest of genomic DNA [ 14] and an ISSR (inter-simple sequence repeats) analysis in which bands are generated by single primer PCR that amplifies products between two simple sequence repeats [ 15].

Simple sequence repeat (SSR) analysis identified CAG as the most abundant trinucleotide motif, while codon usage analysis revealed that the ten most infrequently used codons in E. tenella are UAU, UGU, GUA, CAU, AUA, CGA, UUA, CUA, CGU and AGU.

EST sequencing has also been used to establish phylogenetic relationships and identify simple sequence repeat (SSR) analysis.

SNP: Single nucleotide polymorphism; AFLP: Amplified fragment length polymorphism; SSR: Simple sequence repeat; AMOVA: Analysis of molecular variance.

A total of 34 markers were used for simple sequence repeat (SSR) analysis (Additional file 4: Table S4).

However, simple sequence repeat (SSR) analysis found out that accessions from many countries failed to be distinguished with the exception of accessions from Mexico and El Salvador.

Since contamination of DNA from out-crossing plants critically impacts on estimation of mutation density and identification of mutant, out-crossing plants was carefully examined by simple sequence repeat (SSR) analysis.