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Based on the sequence homology or similarity, complete VP28 protein can be applied as potential recombinant antigen to produce vaccine that triggers the adaptive quasi-immune response in shrimp (Namikoshi et al. 2004, Venegas et al. 2000).
To construct a phylogenetic tree in MEGA4 [26], nifH sequences were first clustered at 92% similarity (complete linkage clustering) and clusters with <10 sequences (together representing 0.9% of the dataset) were removed for clarity.
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For many of the species that have a significant number of tracts isolated (at least 10), it was possible to find LTR tracts sharing more than 97% similarity over their complete length.
A few more traps are set by the brothers, who exploit the similarity between complete (or absolute) and incomplete (or relative) predication: the dog is a dog in any semantic context, but he is a father in relation to his puppies only, and not to his master.
It has been reported that a sequence similarity of complete rpoB gene <97.7% correlates with an ANI (average nucleotide identity between two organisms) value of <94.3% and DDH (DNA: DNA Hybridization) value of <70%, which are the taxonomic benchmarks to assign species status with respect to intraspecies comparisons [22].
We first used hierarchical clustering with correlation distance as similarity measure (complete linkage).
However, not even in these cases the similarity is complete as these patients show the brachicephaly and abnormalities of the neural central system (that similar to our case, one of them is ventricular dilatation).
All identified RNA features were checked for similarities to complete protein genes as well as protein domains to ensure that they indeed represent non-coding RNAs.
In addition to analyses of the evolutionary history of AsA-related genes, attempts have been made to predict their functions in diverse species based on sequence similarities and complete genome sequences (Huang et al. 2013; Xu et al. 2013).
Zygosity was assigned using a twin similarity questionnaire completed by parents that is more than 90% accurate in distinguishing monozygotic (MZ) from dizygotic (DZ) twins and, in a subsample, validated by genotyping DNA markers (Cohen et al. 1975; Nichols and Bilbro 1966; Payton et al. 2001).
In addition, GIP is not a mathematically complete similarity since its similarity values fall into (0, 1].
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