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In this report, we establish the ArchaeaTF database to provide an integrated information resource about TFs in Archaea, such as basic characteristics, domain architectures, and sequence similarities against the linked databases.
The ECB unique ESTs were comparatively analyzed for their sequence similarities against other organisms.
The distribution of sequence similarities against Swiss-Prot was different than that obtained against the NR database.
Among the examined fungi, an N. crassa protein (EAA30745) showed weak similarities against mammalian G9a SET-domain sequences (~30% identities).
Results indicated that 34,218 distinct plant proteins could be identified among the 63,459 unigenes that showed significant similarities against RefSeq database (Additional file 1: Table S3).
The M. violaceum EST database, MICROBASE, is available on the Web and provides access to the sequences, assembled contigs, annotations and programs to compare similarities against MICROBASE.
Similar(40)
ES proteins are searched for sequence similarity against the Wormpep database (WS224) [ 55] for proteins similar to C. elegans.
After assembly and annotation, new coding DNA sequences related to genes of interest were identified with low protein similarity against the closest hits in databases.
Besides harboring the sequence itself, each entry provided detailed annotation information, such as sequence features, chromosomal localization, functional domains, transmembrane region, and sequence similarity against several major databases.
Since modulated RF signals undergo pulse shaping to aid the matched filter detection, our method exploits variability in relative similarity against the dictionary atoms as the key discriminating factor for classification.
Each DNA and translated amino acid sequence was checked for similarity against known genes and protein using nucleotide and protein blast (megablast and blastp algorithms respectively, https://blast.ncbi.nlm.nih.gov).nih.gov
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