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To avoid HOEs, PSI-Search always uses the alignment boundary information from the first significant alignment in which a library sequence appears.
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The sole essential gene on this list is waaU (also known as rfaK) which has significant alignments in several proteobacteria outside the gamma subdivision.
Most of these new findings correspond to genes coding for small polypeptides and/or coding sequences lacking significant alignments in databases, highlighting that the in silico identification of this set of coding sequences is still challenging in genome annotation.
This sequence also produced many significant alignments in nucleotide BLAST (NCBI) and showed a maximum of 235/237 (99%) nucleotide identities with 11 reference strains of genotype 1 (not shown).
Polarized Raman experiments revealed significant alignment changes in the composites as a result of current flow.
During run time, the program aligns sequences in a given metagenomic data set against these precomputed HMMs, and sequences showing significant alignment scores (in terms of e-value) to these models are identified by the meta-rna program as 16S rDNA fragments.
This rather large set of ESTs that did not result in significant alignment with any sequence deposited in non-redundant databases contains candidates for novel honey bee genes.
Host cells cultured on microgrooved surface showed significant alignment and elongation in the axis parallel to microgrooves.
By contrast, no significant alignment was found in SustainPineDB for 5294 of the microarray spots.
This resulted in significant alignment scores for 45 query transcripts in each population.
3 n = a) total number of FAexpTRL; b) number of FAexpTRL in top 10% alignment MWs with significant alignments identified in each of the Lp_MF, Zm_MF, Zm_TA and Hv_TA (monocot) databases; c) number of FAexpTRL in bottom 10% MAWs with no significant alignments identified in any of the monocot databases.
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