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Genome-wide differences in CNV burden, defined as the average span of CNVs, between cases and controls and estimates of significance were computed using PLINK67.
RDA and the tests of significance were computed using the functions 'rda' and 'anova.cca' from the 'vegan' library [21] of the R statistical language [22].
Overall FST values and their significance were computed using GENETIX.
Tests of significance were computed using a robust estimate of the variance.
For all proportions obtained, confidence intervals set at 95% level of significance were computed using binomial exact distribution.
Tests for significance were computed after adjusting for age, sex, smoking status, H. pylori infection, and CagA seropositivity.
Similar(51)
Statistical significance was computed with the test indicated in each figure legend.
In §13.2, we show how the significance is computed in each pixel.
The significance is computed using Gaussian statistics and taking into account the expectation value of the background in the kernel area.
For each kernel size (= smoothing scale), a significance is computed at each pixel location by comparing the total counts under the kernel to the expected background in the same area.
Statistical significance was computed using Pair-Samples T-Test, with a significance level of p < 0.05.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com