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Any fragments found within the level of background MspI signal intensity, measured as 2.5 mean-absolute-differences (MAD) above the median of random probe signals, were categorized as "failed".
About 17 unique signals were categorized as "complete overlap" and excluded from all subsequent analyses.
FISH signals were categorized as "Single", "Dup intra" or "Dup inter" based on the presence of a single signal or multiple signals on the same or different chromosomes for each probe.
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Otherwise, the signals are categorized as voice signals and submitted to the speech processing module.
As previously suggested, cases with >50% of cells with a single CEP10 signal were categorized as "Chromosome 10 monosomy", an additional mechanism of PTEN loss [ 22].
The specific PET uptake patterns signaling inflammation were categorized using the classification from Reinartz et al. [ 4] in the frequencies depicted in Table 1a.
16 proteins fell within categories of signal transduction, 18 were categorized in electron carrier pathways, and so forth.
Important signal transduction elements were categorized such as putative serine/threonine protein kinases (119 unisequences) and transcription factors (89 unisequences).
Another 14% (4/28) were categorized as signaling molecules and interaction.
Ratio images (F365ex/F405ex) were created to evaluate the lesion brightness compared with that of normal mucosa, and specimens were categorized into a no signal or high signal group.
Transcripts with values of 2/10 or less were categorized as having 'low' H3K27me3 signal, and genes with greater than 2/10 were categorized as having 'high' H3K27me3 signal at the TSS.
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