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The second most prevalent failure mode in the "process related" category, "Mixed clone with vector sequence" (30% of reads in this classification), is likely a result of two side by side colonies being picked into the same well or through contamination originating from the use of automated liquid handlers.
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A fewer number of transformed colonies were positive for both EGFP and mCherry (see example Fig. 3C, left side colony in bottom panels of Day21).
Further on is Rockhopper Point, where rockhopper penguins, with their funky yellow hairdos, jump up steep steps (hence their name) from the ocean to their cliff-side colonies.
To test for potential sampling effects due to within-colony variation of Symbiodinium, tissue was also collected from the sides of colonies in January (NP, Exuma Cays) and March (ADM, Upper Florida Keys) of 2004.
Heading south from La Paz, there are two options – go turn right for the ocean-side artistic colony of Todos Santos, home to the original Hotel California, which is still open for business; or go left for the kite-surfing mecca of La Ventana, where the Sea of Cortez serves up ideal winds for about five hours each day.
After thawed completely, the filter paper with colonies side up was transferred onto presoaked filter paper in 5 ml of staining buffer (60 mM Na2HPO4, 39.8 mM NaH2PO4, 10 mM KCl, 1 mM MgSO4, 0.817 mM 5-bromo-4-chloro-3-indolyl-β-D-galactopyranoside [X-gal] and 38.5 mM β-mercaptomethanol) in a 90 mm petri dish for 8-12 h at 37°C.
(Side note: Our colony is fixed and if any genitalia-sporting cats come into the colony, my former neighbor traps them and gets them fixed through the Austin Humane Society's trap-neuter-release program).
6 Briefly, 50-mL water samples were filtered through a 0.22-μm nylon membrane, transferred colony side up onto a petri dish with mFC agar containing rosolic acid, and incubated overnight at 44.5°C, and blue colonies growing on the plate were counted.
And it was to South Africa as a whole that Smuts looked; he did not take the side of one colony or state over the others, but rather treated the region as one single unity.
The thermographed colony side was changed regularly between measurement days.
All marked bees of any age found on one side of the colony were measured by scanning the combs with an infrared (IR) thermographic camera (see below).
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