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This transition is represented in the alignment of Figure 2. All these substitutions were silent as shown by alignment of sequence R in BLASTX (NCBI; not shown).
It is noteworthy, that all the nucleotide differences observed between this new strain and the reference strains of genotype1 in nucleotide BLAST were synonymous as shown by alignment of sequence R in BLASTX.
Similar(58)
as shown by the alignment of the cluster 2611 of the CyanoClust (Fig. 1B).
In addition the four cysteine residues forming two disulphide bridges in TrCBM1 are strictly conserved in the CBEL_CBM1-1 ashownwn by the alignment of the domains.
Similar to the high identities shown by the alignment of amino acid sequence, high conservation of exon/intron structures could also been observed from the schematic representation of cotton Sus genes.
In all cases, it appears that the "2 copies" are actually truncated pieces of the full-length gene, as shown by sequence alignment for gene A, which encodes a helicase protein.
The extent of their conservation across the plant kingdom was shown by an alignment with the whole genome sequences of A. thaliana, soybean, rice, black poplar and grape (Table S1 in Additonal file 1).
In addition, 18 SNPs differed between the A and C genomes, as shown by multiple alignments of 16 FAE1 sequences from the three Brassica species (Table 4).
Differences in the apo- and biotin-bound conformations of SA were clearly shown by calculating alignments of the loops connecting the β-strands (Table 2).
While the genes are very similar overall, there are two different sources of evolution (Red and Blue) as shown by DNA alignments b) and average distance tree.
Conservation of mutated residues of BTR1 as shown by multiple sequence alignment of human BTR1 with homologs and representative members of the human SLC4 family.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com