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Sequence identity analysis of 450 monomers originating from c0 t-1 and BAC end sequences revealed that monomers show identities between388% and 100%.
All the MITE families share from 114 to 198 bp with their relative P autonomous subfamily (the 5' and 3' homologous regions joined), and show identities varying from 52%to84.2%2% in these regions (Fig. 3).
Nucleotide and amino acid sequences of SKA-1 did not show identities with those of group A or C rotaviruses, although they showed some relatedness to those of group B rotaviruses.
Amino acid sequence alignments for the eight virB2 paralogs of Ap (see additional file 6) show identities that rank from a high of 93% between tick cell expressed paralogs APH_1133 and APH_1134, and a low of 22% between non-expressed APH_1136 and human cell expressed APH_1145.
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In addition to these protein sequences exhibiting a very high similarity, protein sequences from five clinical P. aeruginosa strains show identity percentages with EbyB sequence of 81.9%, whereas the other RND sequences show identity percentages lower than 70%.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com