Alignment-Editor should read "Alignment-Annotator".
This measurement should avoid alignment mistakes between the polarization direction of the incoming light and the polarizer, since minor changes in the value of the TE polarization can significantly effect the extinction ratio.
Furthermore, our examples highlight the poor fit of "generic" empirical multi-rate models and suggest that new multi-rate models should be alignment specific.
Therefore, supply chain management systems reforms should ensure alignment with national procurement systems.
Physical mapping or other complexity-reduction processes [ e.g., Long Fragment Read (Peters et al. 2012)] should improve alignment and the accuracy of variant discovery.
In addition, the evolutionary distance between the two galliforms, chicken and turkey, is considerably shorter than that between chicken and zebra finch, which should facilitate alignment and make divergence estimates more accurate.
We argue here that next-generation phylogenomics should consider alignment-free methods as an alternative – but not the only one.
The description of Alignment-Editor suggests that alignments should be prepared using the full Java system and the final alignment can then be downloaded as HTML files in a ZIP archive.
This process of alignment should be undertaken as rapidly as possibly, and its outcome should be communicated to internal stakeholders and external partners.
We expect that similar tissues should exhibit consistent alignment p-values, resulting in groups of homogenous tissues with coherent alignments scores.
