And that shortest path initially will just be the shortest sequence of steps.
Contigs sharing identity over ≥95% of the length of the shortest sequence in a set of putative homologous sequences were clustered.
Aiming for a sum of 21, what's the shortest sequence of numbers that allows you to continue counting forever?
We give an O(n5) algorithm for the problem of designing the shortest sequence of moves that takes the distinguished pebble from its original position to its destination.
J Biol Chem 1992 267 25010 8; Yoshida A, Suzuki M, Ikenaga H, Takeuchi M. Discovery of the shortest sequence motif for high level mucin-type O-glycosylation.
In combination, these fragments encompass 20 27% of the variation amongst the genomes (average total length ∼14,000 bp), thus providing an efficient means of encapsulating the greatest amount of variation within the shortest sequence.
The N50 value (the shortest sequence length at 50% of the genome size) of the B. platifrons scaffolds and contigs was 343.4 Kb and 13.2 Kb, respectively; and the N50 value of the M. philippinarum scaffolds and contigs was 100.2 Kb and 19.7 Kb, respectively.
In particular, the NCM executed in the filtering process is given by the length of the shortest sequence involved in the convolution.
The optimal assembly was selected based on the typical assembly assessment metrics, including N50 [the N50 is defined as the shortest sequence length at 50% of the contigs or genome (Earl et al. 2011)], total size, the largest contigs length and the number of contigs.
The program EST-e-mate utilizes ClustalW [51] for aligning the sequences, while keeping the reading frame intact with sequence alignments trimmed relative to the shortest sequence.
In particular, the shortest sequence drives expression in the hematopoietic region, whereas sequences between −100 and −1800 nucleotides direct the expression mostly to the head and trunk, and additional sequences appear to have ubiquitous expression properties.
