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By 1954, this route was fully paved and US-50 was moved to this shorter alignment.
They also showed shorter alignment sizes.
Therefore, they might prefer shorter alignment with small rmsd over a longer alignment with significantly larger rmsd.
Instead, the performance of shorter alignment groups such as BLAST-based methods and SSEARCH with MIQS.SCOP40-v is exceeded in alignment precision comparison.
The tree in Figure 3(b) presents a similar arrangement of branches and distances, which confirms the tree based on a shorter alignment of the selected clones).
However, a tree based on a shorter alignment including more sequences (Additional file 9) swaps the position of the prasinophyte and stramenopile FH2-associated PTEN domains; thus we have to consider their relationship to angiosperm Class II formins still unresolved.
Similar(44)
Other studies [14], [19], [40] have favored the same topology using shorter alignments but a more comprehensive taxon sampling.
Considerable parts of the ITS were not identically aligned between these three approaches, including a very long alignment-ambiguous part of the ITS1 and two shorter alignment-ambiguous parts of the ITS2.
On shorter alignments, this effect would be even more pronounced.
The applied ratio was smaller for multiple alignments due to typically shorter alignments.
As compared to other trees, these were based on shorter alignments and received lower support values.
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