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It coincides well with the fact that the shared repeat sequences, but with different amount of such fragments, among the Glycine species.
The largest shared repeat (49 bp) represents shared sequence between psaA and psaB.
IR: inverted repeat; T: tandem repeat; – no repeat; 0 gene absent from cpDNA ; * shared repeat; # located 5' to the gene.
Fold change in density of repeats contributed by specific and shared repeat subfamilies (see above) was subsequently plotted by divergence bin.
A similar result was seen in zebra finch, where class II BACs hybridized to several pairs of microchromosomes each, probably because of shared repeat content of the clones (Balakrishnan et al. 2010).
Determination of the shared repeat elements between SD20-NP/DW7-ToxB and the reference showed that the two most common types of repeat elements in BFP-ToxAC are also the most common elements shared with the pathogenic isolate, DW7-ToxB (Table 3); 46.5% and 28.1% of the reads that mapped to repeats in the reference represented shared DNA transposons and LTR retrotransposons, respectively.
Similar(53)
After removing the shared repeats, the remaining sequences were annotated using the all-plant repeat database.
We compared the Manhattan distances of log2 transcript estimates) for tandem genes separated by five-way shared, repeat-associated and "regular" CTCF-binding sites with tandem genes not separated by any CTCF-binding sites by using a Wilcoxon singed-rank test.
The location indicates position of shared repeats.
Here, we defined repeats that had identical lengths and located in homologous regions as shared repeats.
The majority of the shared repeats were located within intergenic spacer regions and introns.
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