As an example, eight orthologous clusters containing hypothetical proteins are shared by both Chlamydiaceae and Parachlamydiaceae (see pCOMP clusters 048-050, 062-067, 062, 067), and four of these clusters include proteins from all chlamydial organisms (pCOMP 049, 058-060).
Two major DEG groups shared by both genotypes were either induced (cluster V) and repressed (cluster I) by cold.
Some clusters shared by both C. burnetii and TNF were enriched for inflammation and immunity GO terms.
We defined a set of 165 syntenic clusters shared by both S. symbiotica strains, with an average size of 9,596.90 bp (for strain SCt).
By direct comparison of the different clusters, the predicted proteins shared by both species could be identified.
For instance, if a certain miRNA targeting hundreds of genes is shared by different miRNA clusters, the clusters' functional annotations may become very similar even though they consist of very different miRNA members, just because they share the 'very bush' one.
A director at JPMorgan says the key to future climate agreements are targets shared by small clusters of regions and countries, not binding global agreements.
We deemed that a gene shared by multiple clusters may play potential roles in the regulatory crosstalk among these clusters.
The start of the iteration begins with the pair wise cluster comparison, where the number of ESTs shared by two clusters is calculated.
For each read contained in a cluster, we add the l-mers in the mate of the read to the cluster, and then construct a weighted graph whose nodes represent clusters and edges are weighted by the number of common l-mers shared by the clusters connected by each edge.
Broad range comparison showed that 75 up-regulated and 68 down-regulated IIGs were shared by the three clusters, whereas 62, 214, and 4,488 IIGs were unique to NILs in Clusters I, II, and III, respectively.
