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In the nocturnin and angel family, the drosophila and human genes share one intron position.
TcPsGEF, PhcPsGEF, and LgPsGEF share one intron position as well as phases among them.
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Indeed, although plants and coelomate animals did not form a clade in the MS tree and instead appeared to cluster with different bacterial species, plant and coelomate MS genes shared one intron in the same position, which is best compatible with their origin from a common eukaryotic ancestor.
Itbd, the gene definition proposed by Aceview [ 8], clusters all transcripts which share at least one intron boundary.
GFP genes in B. floridae and N. vectensis appear to share at least one intron in the homologous position of the codon 32.
Thirdly, members of a particular subgroup typically share one or more intron positions not found in members of other subgroups (Fig. 3); pARTs 1 4 pose notable exceptions to this rule.
AS events were identified by comparing these reference isoforms to all other isoforms (second isoform) from the same locus for which either of the following conditions were met: (i) the two isoforms shared at least one intron or exon; or (ii) fifty percent of the exonic nucleotides were shared between both isoforms.
Consistent with the high bootstrap value for this clade the corresponding genes share one or more conserved intron positions in all except one case.
CaHsfs shared a highly conserved exon/intron structures, with one intron and zero intron phases (Additional file 2: Fig. S2B).
One intron position (p11) was shared by the nematodes and several fungal species.
The F-box genes were classified into four classes depending on their intron composition: intronless, one intron, two introns, three introns and more than three introns per gene.
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