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Furthermore, the predicted secondary structure profile of the RhVA CP is strongly similar to the experimentally determined structure of the NC of Severe fever with thrombocytopenia syndrome virus (Phlebovirus), despite several insertions in the former protein.
Several insertions in regions associated with positive selection were either found in, or thought to regulate, the PC gene.
In a previous study, we located several insertions in the genome of S. paratyphi C strain RKS4594 by comparing it with other Salmonella genomes [ 9], including one, SPC-P1, which was a prophage present only in S. paratyphi C among all sequenced Salmonella strains [ 8].
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D. melanogaster embryos were transformed by the piggyBac-otu-lacZ transgene, allowing recovery of several insertions strongly expressed in nurse cells and the oocyte, the two populations of germline cells of ovaries.
We identified several insertion sites in our dataset that are likely the result of mapping errors and confirmed the absence of integrated transposons at two of them (Additional file 1: Figure S5).
Several insertions, deletions and large rearrangements in the form of inversions and translocations were found (Additional file 1).
In CTX phages of the classical biotype, the region encompassing the LexA-binding site contains several insertions with respect to El Tor biotypes, in which the combined RstR-LexA regulation has been analyzed in detail [ 37] (Additional file 1).
The absence of gibbon PPP1R2P8 sequence could also be explained by the several insertions present, similar to what happens in other species, virtually dismantling it and making the retrieval impossible.
Major gene deletions were not identified in strain K5030; instead, several insertions were detected (Table 2).
However these lines contain several insertions of Kasalath and the phenotype could be explained by different loci in each line.
There was no difference in the amino acid sequences of OsNramp1 between Habataki and Sasanishiki, but the gene expression was higher in Habataki and other indica cultivars probably caused by several insertion and deletion in the promoter region (Takahashi et al. 2011).
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