Sentence examples for several different sequence alignment from inspiring English sources

Next, we tried out several different sequence alignment and structural superposition software packages to align the entire proteins.

Moreover, several different sequence identity scores in the ClustalW alignment to a known Human H/ACA snoRNA were required.

Expecting the generally divergent nature of OBPs sequences (∼20% amino acid identity over all sequences) to make the sequence alignment problematic [49], we used several multiple sequence alignment (MSA) methods to evaluate potential different outcomes of using six alignment approaches (Table 2), which differ greatly in popularity and general approach to the MSA problem [50].

In fact, several different state sequences can lead to the same sequence alignment, hence we may not always be able to unambiguously determine the underlying state sequence for a given pairwise sequence alignment.

For instance, different multiple sequence alignment (MSA) algorithms can produce different alignments, which in turn can influence the inferred phylogenetic reconstruction and thus lead to different conclusions.

Target transcripts of these probes were annotated using several sequence alignment algorithms.

If activated, ReXSpecies 2.0 can employ several sequence alignment tools to redo the alignment, per default muscle [ 61] is used.

The NY 174 alignment remained intact for many years, while NY 175 went through several different alignments.

Several examples of multiple sequence alignments depicting the high conservation of these RUFs among different trypanosomatid species are shown in Figure 4.

We demonstrate that this measure of neutrality successfully distinguishes alignments of known bacterial structured regulatory RNAs from several different types of decoy data including both shuffled alignments and alignments constructed from intergenic or protein-coding sequence.

A protein sequence alignment of different PRLs was also performed (Figure 2).