Sentence examples for several assembly programs from inspiring English sources

There are several assembly programs, most of which can use information from paired-end tags in order to improve the accuracy of assemblies.

Several assembly programs (e.g. Phusion and Atlas) utilize Phrap [10] at the early stages of the assembly.

Consequently, a comparison of several assembly programs is needed to determine the best combination of parameters, which can then serve as a guideline for sequence assembly performance.

Several assembly programs dedicated to short or medium reads were used to generate contigs: Velvet (www.ebi.ac.uk/~zerbino/velvet), SOAPdenovo (http://soap.genomics.org.cn), and CLC Genomics Workbench (www.clcbio.com) (J. Cheval et al., unpub. data).

Starting with scaffolds and contigs built from paired-end (PE) and mate-pair (MP) sequencing libraries using several assembly programs run with various parameter settings, the assembly of the mitochondrial genome of L. incisa was manually closed into a single, continuous, circular-mapping sequence of 69,997 bp (Fig.  1).

Several genome assembly programs have been developed, such as the TIGR assembler [3], the Celera Assembler [4], Atlas [5], Arachne [6], Phusion [7], JAZZ [8], and PCAP [9].

Over the past ten years, computer-science students have gone from arriving at university with a knowledge of several assembly and high-level programming languages to having little more than a working knowledge of HTML, Javascript and perhaps PHP simple tools for constructing web sites.

Several shells allow you to run assembly programs for ZShell, Usgard, and some other shells on the TI-86.

We have assessed the effect of sequence quality, various assembly parameters and assembly programs on the final assembly output.

The Governing Body directs several committees that are responsible for administrative functions, including publishing, assembly programs and evangelizing activities.

Selecting the values of parameters used by de novo genomic assembly programs, or choosing an optimal de novo assembly from several runs obtained with different parameters or programs, are tasks that can require complex decision-making.