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These include the proportion of sequences with a gap, the level of amino acid similarity and, if several alignments for the same set of sequences are provided, the level of consistency across different alignments.
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The raw sequencing data can in turn have several alignments associated, for example, using different aligners or alignment configurations.
In cases of incompatibly truncated protein sequences several alignments were produced for the same gene.
Therefore, several alignments were generated for the FeSII sequences, using information from sequence database searches, secondary structure prediction and available homologues with resolved 3D structures.
Several alignments were constructed in this study for molecular phylogenetic analysis.
Several alignments were constructed.
The f1-based training was contrasted to the use of several alignment characteristics, 13 for insertions (f13) and 17 for deletions (f17).
Literature of last five years accounts for several alignment-free methods, arisen as alternative metrics for dissimilarity of biological sequences.
In the figure, for several alignment tools, the relationship between the mapping quality reported by the alignment tool and the actual mapping accuracy (the fraction of accurate mappings among those that are assigned the respective quality score) is shown.
Several alignment-free methods have been devised for the detection of enhancers in ChIP-Seq data [ 13- 15] and also of entropic profiles [ 16, 17].
For cox1 and cob sequences, several alignment alternatives were attempted, which were independently followed by phylogenetic analyses.
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CEO of Professional Science Editing for Scientists @ prosciediting.com