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The raw sequencing data can in turn have several alignments associated, for example, using different aligners or alignment configurations.
Several alignments of the aftershock hypocenters corresponding to the fault planes of the main shock can be recognized.
To compare intron positions we used several alignments with Clustal W (www.ebi.ac.uk/) or at NPS Web server (http://npsa-pbil.ibcp.fr).ibcp.fr
Although other methods, such as DALI [32] and CE [33], can simultaneously make several alignments with statistical Z-scores, most of them are local/partial alignments.
In addition, if one has doubts about the correct alignment, one can test several alignments, prepare the corresponding models and score all of them with Rd.HMM.
Several alignments were constructed.
Similar(41)
Based on the co-crystallized compound (PDB ID: 1UWJ), several alignment methods were utilized to derive reliable CoMFA and CoMSIA models.
Essoussi et al. compared several alignment tools, indicating that no single tool can consistently outperform other ones by the estimation of quality alignment [35].
Tentacle can use several alignment algorithms.
Other methods use several alignment features as evidence of an indel.
Several alignment-free measures, based on k-mers counts, have been used to cluster reads.
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