Sentence examples for several alignment methods from inspiring English sources

Based on the co-crystallized compound (PDB ID: 1UWJ), several alignment methods were utilized to derive reliable CoMFA and CoMSIA models.

We consider several other alignment methods as baselines.

We used several multisequence alignment methods (PsiBlast [ 6], Clustal W 1.74 [ 7], Pileup of the GCG package [ 8]) to initially align KirBac with eukaryotic Kir sequences accessible in public databases.

Several graph alignment methods have been proposed towards this goal, based on three main ideas: The alignment can be based on the similarity of vertices, and map vertices onto each other that, e.g., share a certain sequence similarity (if vertices represent genes or proteins) or if aligned enzymes catalyze the same reaction (if vertices represent enzymes in a metabolic network).

Literature of last five years accounts for several alignment-free methods, arisen as alternative metrics for dissimilarity of biological sequences.

Several alignment-free methods have been devised for the detection of enhancers in ChIP-Seq data [ 13- 15] and also of entropic profiles [ 16, 17].

It should be emphasized that several existing range alignment methods are already capable to correct range migrations for SA-ISAR data [9 11].

In recent years, several multiple network alignment methods have been developed.

Here we review several of the published alignment methods, as well as a method for determining alignment significance.

We demonstrate significant increase in the alignment accuracy of several well-known distance-based alignment methods, obtained by utilizing the superpositions that rigorously optimize a very simple and intuitive alignment metric, defined as the largest number of residues from the input proteins that can be fit under a predefined distance cutoff.

Other methods use several alignment features as evidence of an indel.