Further, a Taguchi-based parameter setting is undertaken to ensure using the appropriate parameters for the algorithm.
A frequency analysis of all MeSH terms in the Silver Set was undertaken.
Identification of images in the test sets was undertaken in two rounds.
Filtering of 4-fold degenerate sites from our "CDS-only" data sets was undertaken using Proseq3 (Filatov 2009).
The exclusion of some probe-sets was undertaken on the basis that non-changing genes provide little information in a gene co-expression setting.
Overall, themes were largely consistent between coders, whereby contradictory coding was apparent, discussions with all coders and triangulation with the full data set was undertaken to achieve consensus.
A detailed review of the training data set was undertaken by two psychiatrists (RP and RS) to identify and annotate key phrases within the records that were either relevant or irrelevant for keywords related to each symptom.
Interrogation of the recently published ChIP-Seq ENCODE data sets was undertaken to identify enhancer, transcription-factor-binding and RNA-polymerase-II-binding marks in the 16p13.13 region, which were consistent with the role of intron 19 of CLEC16A as a regulatory sequence.
A series of DNA binding experiments with the oligonucleotides representing the human promoters in the RpZRE3-promoter-18 data-set, were undertaken comparing non-methylated with methylated RpZRE3-core elements.
