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The spectra were aligned setting the option maximum peak shift to 0.1% of the mass over charge (m/z) value.
For example, setting the option to "4" will filter out any SNPs that have less than four reads per sample covering the base.
With the INLA approach, both components of DIC, p D and D ¯, can be computed by setting the option dic = TRUE in the control.compute statement within the inla-call.
Using inla, the quantities needed for calculating these score values are available as by-product of the main computations when setting the option cpo = TRUE in the control.compute statement within the inla-call [ 37, 38, 51].
In order to get a cardinal (interval-valued) utility representation of a preference ordering i.e., a measure that represents not only how an agent orders the options but also says something about the desirabilistic "distance" between options we need a richer setting; the option set and the corresponding preference ordering will need to have more structure than for an ordinal utility measure.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com