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To investigate the regulation of homeologous gene expression between the haploid and hexaploid wheat, two sets of expressed sequence tags were exploited.
Since several H. pylori OMP genes are variably expressed owing to slipped strand mispairing at homopolymeric nucleotide tracts, this results in growth of clonally related H. pylori with many different sets of expressed OMPs, some of which were likely recognized by antibodies.
For instance, given genes in a body may be differently expressed in a number of samples forming different sets of expressed genes, one set per sample.
These sets of expressed genes do overlap and analyzing them would lead to subsets of genes co-expressed together in a large number of samples.
The GPCR family has moved on from a few structures and use of derived homology models to a database of structures and experimental parameters, and full sets of expressed receptor subtypes [87 89].
The sets of expressed mycorrhizal transporter genes were analyzed for significant enrichment of specific annotations.
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Previous simulated data used the expression level profile of this data set, so they had the same set of expressed transcripts and expression levels.
Based on the alignment results, we identified the set of expressed transcripts and estimated their expression levels.
Having generated the set of expressed transcripts and the corresponding expression values, we simulate 75 bp paired-end error-free reads.
We consider an extension of the model originally introduced by Jiang and Wong (2009) and used in NSMAP for estimating isoform expression for a known set of expressed transcripts.
The set of expressed genes were analyzed for differences in their level of expression in the two celery varities using IDE6 software.
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