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Exact(11)
To reduce the effects of this uncertainty, we estimated ED using three sets of branch lengths.
Species values of ED were calculated as the geometric mean of scores under the three sets of branch lengths.
For each replicate, a phylogeny with branch lengths is chosen from a set of sixteen possibilities that have equal probability: on each of two four-taxon topologies (AB/CD or AC/BD), there are eight possible sets of branch lengths, half in the Felsenstein zone and half in the inverse Felsenstein zone.
The mixture model assumes several components with different sets of branch lengths.
There was little variation in the maximum likelihood estimates of parameter values between the three sets of branch lengths (table 1).
There was no support for WGDs occurring on both these branches; the posterior probability was less than 1 × 10−9 for all sets of branch lengths.
Similar(49)
Similar sets of branches follow from other "exacerbation" branches, but with different probabilities.
We chose the same three sets of branches (A-C) that we used for the branch model described above.
Notice that these tests contrast sets of branches rather than sets of sites and therefore do not depend on the complementary alignments, X C.
Reconstruction of numbers and rates of gains and losses of foreign genes on different branches or sets of branches on the Rotaria tree.
Phylowood allows users to mask, unmask and highlight sets of branches using simple doubleclick, click and mouseover events through either the phylogeny or geography displays.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com