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Probe sets assigned with a gene symbol were functionally classified according to biological process and molecular function using Netaffx Analysis Center [ 34].
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Before estimation, hidden states of the training set were assigned with initial values of these parameters, and CNVs that spanned at least three continuous SNP sites were treated as real variations to eliminate coincidence from noise.
Some 84% (n = 788) of the tumors in the validation set were assigned with a probability higher than 80% of belonging to one of the 6 subgroups, demonstrating that the classification framework is robust.
We assembled a reference reaction data set containing reactions assigned with KO for each KEGG map (see Additional file 1: Figure S1).
One of the sets of elements is assigned with the bi-directional material data of fibrous reinforcement.
Each node in the triple is assigned with sets of loss and gain events under each of the above inheritance assumptions: [Gi, Li; Gn, Ln] for the parent and similar quadruples for the children (see Figure 4).
They are named according to their positions, and then translated into element sets in ABAQUS, and each assigned with an initial φ10 mm bar.
In deeper regions (approximately 50 km), the model temperature is 600°C for all parameter sets except those which were assigned with the highest values of λ (i.e., 0.98).
To be able to employ the parity bit selected or permutation spreading techniques, every user is assigned with a set of Q mutually orthogonal spreading sequences.
Cluster of orthologous clusters (COG) (Tatusov et al. 2000) were assigned with a set of custom Perl scripts (BLASTP e-value cutoff of 1e−), and Circos (Krzywinski et al. 2009) was used to plot the genome overview.
To test and compare qualities of annotations done by different annotators, three annotators were assigned with the same set of three projects (RH, DH, and HP).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com