Sentence examples for set ranking from inspiring English sources

The rank-based method consistently prioritized PI3K gene sets; with the KEGG phosphatidylinositol signaling system gene set ranking first along with many additional PI3K/ERBB related gene sets (Additional file 1: Table S5).

The additional information of genes in overlapping pathways should not be ignored, as shown in a study where weighting genes based on their appearance in the gene sets can improve gene set ranking and boost sensitivity of the analysis [ 7].

To make the procedure easier and more practical, the normalized weighted ratings are defuzzified into crisp values by using a new maximizing set and minimizing set ranking approach to determine the ranking order of alternatives.

On the multi-label test set, ranking scheme was utilised to compare the generalisation ability of the two models.

The multiple-affinity model builds the relationship model among main entities and concepts in multiobjective problems (MOPs) and multiobjective evolutionary algorithms (MOEAs), including feasible solution, variable space, objective space, Pareto-optimal set, ranking and crowding distance.

Although PEBP (CBFb) was only marginally enriched (p∼0.1) in this list, it appeared among the ten top TFBSs exhibiting the lowest p-values both in the lists derived by DEMON from consensus data sets (ranked 2nd and 3rd) and from the hIPCs vs. PANC-1 cells experiment data set (ranked 6th).

The output of the pipeline consists of a non-redundant ranking of GO BP terms overrepresented in the input set, ranked according to their Bonferroni-corrected p-values.

The gene sets of the Balko, and Chen but not of the Larsen signature showed statistically significant enrichment at the top of data set ranked by survival.

The high and low gene expression groups were identified by considering the top and bottom 10% of genes in the data set ranked by expression level (percentile method).

The CTD-based gene sets ranked consistently and considerably higher than the next-gen TM-based gene sets over all GSA tools, with one exception: the next-gen TM-based ZnSO4 gene set ranked higher on the ZnSO4 gene expression data set using ToxProfiler (Table  1).

NES represents the enrichment of genes in the designated GSEA gene set, ranked according to the overrepresentation of genes at the top or bottom of the list, normalized to gene set size.