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To evaluate the signal detection quality, we used a reference set of true signals.
Our reference set of true signals was rather small and specific to our study objective and methods.
Regarding quality, the SDRs resulting from any of the SSD runs were checked against our reference set of true signals.
First, we did not consider any a priori set of true non-driver genes (negative control) and, second, we did not divide the CGC into OGs and TSGs.
We compared TACO with the two other dimer prediction methods, SpaMo [ 13] and iTFs [ 12] using the 29 known dimers as a benchmark set of true positives.
As these values are considerably smaller than the ones obtained with the data set of true TFBSs, this suggests that while low nucleosome occupancy is encoded around true TFBSs, this does not mean nucleosomes should be absent.
The user can select which lines of evidence to use, and each predicted association in the database is assigned a confidence score, based on comparison to a common reference set of true associations.
To choose this threshold, we developed a set of true positive HGT genes by combining the HGT candidates from Richards et al. [ 12], Schmitt and Lumbsch [ 21] and Richards [ 28].
Fertilize the seedlings with a houseplant fertilizer at half the strength recommended when the seedlings have one set of true leaves.
He took it for granted, as do many mathematicians, that the set of true statements is ω-complete.
Two realizations of the same language are said to be elementarily equivalent if they have the same set of true sentences.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com