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More precisely, consider the set of trees for some d* such that.
We first generated a comparison set of trees based on randomization of genotypes.
The AU test has been designed for obtaining the confidence set of trees using maximum-likelihood.
We used the approximately unbiased (AU) test, which is based on nonparametric resampling using the likelihood criterion, to identify a 95% confidence set of trees from a larger set of trees.
For the simulated datasets, we set X to be the set of bipartitions from the input set of trees.
Then using this model, the best phylogenetic tree or set of trees is found using some optimization procedure [ 25].
Consensus methods construct species tree topologies from gene trees according to deterministic rules applied to the input set of trees [ 12, 13].
Thereafter we investigated whether the maximum likelihood trees for these hypotheses are part of the confidence set of trees applying the expected likelihood weights method [ 57].
Phylogenetic networks can be computed from a wide range of data, including multiple sequence alignments, distance matrices, set of trees, clusters, splits, rooted triplets, or unrooted quartets.
"The Amazon is not just a set of trees," he said.
Higher education disciplinary approaches often tend to focus only on a set of trees within a great forest.
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