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A complete set of read mappings and summaries of the numbers of reads assigned to each organism is given in Table 2.
However, this is a time-consuming process and we would therefore be limited to an arbitrarily selected set of read lengths and a small, but hopefully representative, collection of bacterial genomes.
In Figure 3, the mapping set of read 5 has three possible mappings with identical scores.
In Figure 3, the mapping set of read 4 has two different mappings (one from maternal and one from paternal).
There is significant diversity in the type of information that may be represented by a set of read sequences.
Artemis uniquely provides a comprehensive set of read alignment views and has the ability to display multiple different views of the same dataset at once to the user.
Similar(52)
Smartdenovo was then used to assemble this set of reads into de novo contiguous sequences (contigs).
Reads are assigned to viral genomes by nucleotide and translated alignments resulting in a set of reads per genome.
For each read Rr we once again construct multiple alignments from the new set of reads in Rr.
The set of reads for this genome are freely available from the Edena assembler website (www.genomic.ch/edena.php).
By doing this, we effectively localize the assembly problem and restrict the set of reads that any particular read can overlap.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com