Sentence examples for set nucleotide from inspiring English sources

For each data set, nucleotide sites were resampled to generate bootstrap pseudomatrices of 100, 250, and until 5000 characters with increasing steps of 250 sites.

If not, we obtained the probe set nucleotide sequences from NetAffx and performed a Blat search in UCSC Genome Browser (hg19) to identify the correct target gene (http://genome.ucsc.edu/cgi-bin/hgGateway). Probe sets which recognise only intronic sequences or map to several loci were excluded from the list of differentially expressed probe sets.

For the DPGP2 data set, nucleotide diversity was largely consistent with the previous estimates of Pool et al. (2012), although estimates for the newly assembled sequences were generally slightly higher (Table S9), perhaps due to the improved coverage of more diverse regions.

Estimates of divergence times for mosquito lineages were calculated using the parametric Bayesian-relaxed clock approach implemented in the programs ESTBRANCHES and MULTIDIVTIME [ 43] and using the combined gene data set (nucleotides) including third codon positions.

For a nucleotide (or a set of nucleotides) at a given SS position, we can then compare its average multispecies conservation (obs) with the average conservation of the same nucleotide (or set of nucleotides) within a nearly neutrally evolving region (exp) by estimating c = (obs − exp)/ exp.

The SSU dataset (1028 nucleotide positions), the combined SSU/LSU data set (2522 nucleotide positions), and the LSU data set (765 nucleotide positions) were manually aligned in BioEdit v.7.0.5.3 [ 39] based on the secondary structure models of P. polycephalum and D. iridis[ 22, 40].

First we used DNAsp software to extract a genetic differentiation parameters set from nucleotide sequences (haplotype number, haplotype diversity, nucleotide diversity and pairwise difference).

In the concatenated data set, 323 nucleotide substitutions were found in 277 variable sites and 120 sites were parsimony informative among them.

A reference kinase gene set in nucleotide space with introns removed.

The data consist of the following: A reference kinase gene set in nucleotide space with introns removed.

The overlapping windows were combined into the resulting regions with the boundaries set at nucleotide sites supporting noncanonical phylogenetic configuration.