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GCINT show the gene names, intensity values for the probe sets, locus link accessions and descriptions for the two matched arrays.
Among these loci, a set of loci (1214 loci in diploid family 1; 1138 loci in diploid family 2; 1765 loci in diploid family 3) were successfully assigned to 30 linkage groups with a LOD score of 4.0 to 8.0.
We tested four evolutionary scenarios on a reduced data set (only loci with a missing data rate <3% were used, yielding 712 loci; to confirm that the reduced data set is representative a DAPC was performed, SI 5, Fig. S1).
Evolutionary scenarios to describe the demographic history of Pityogenes chalcographus using approximate Bayesian computation (ABC) analysis on a reduced data set (712 loci).
We interrogated our full CDS data set for loci that have been implicated in aspects of sensory perception of sound, including those that have been linked to deafness and/or ear development.
Type I error rate was evaluated by setting the locus heritability h2 to zero, whereas power was evaluated by setting it to a specific value.
Type-I error rates are estimated by setting the locus heritability to zero, and power is estimated by setting it to a specified proportion, e.g., 0.5%.
Results clearly indicate a major host preference locus (or set of tightly linked loci) in the region around bkbwg.
The locus pair { M i, M j } is the locus set, L, being considered.
The full locus set S = G1 ∪ G2.
33 strains were PCR amplified at the 24-MIRU locus set.
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