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The corresponding BLASTX E score is shown in brackets fThese are two probe set IDs for the same gene.
Out of the twenty-three yield-related genes reported so far, specific probe set ids could be found for all but one gene viz.
The probe set IDs were converted to genes symbols.
The microarray dataset obtained from these experiments contains expression levels for 22690 Affymetrix probe set IDs.
Affymetrix probe set IDs were uploaded into IPA and queried against all other genes stored in the IPA knowledge database.
In cases that one gene symbol matches multiple probe set IDs, the probe set which shows the most variance across the samples was mapped to the gene.
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Once probe-set IDs and their expression values were combined, the expression value for each UniGene ID was obtained.
These files link the probe-set IDs of various platforms.
A prerequisite is the use of (or conversion to) Affymetrix HG-U133A probe-set IDs.
Probe-set IDs which did not match to any UniGene ID were dropped.
Affymetrix probe-set IDs were imported to the Ingenuity Pathway Analysis (IPA) software [21].
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