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The validation data set considered for the appraisal of the proposed technique is recorded between November 2009 and March 2010.
In this data set, considered for monoglycated peptides with one reaction site, glycation at lysine residues: K166 of the αA chain and K166 of the αB chain generally occurs.
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All pairs were analyzed in all clusters to validate (or invalidate) the identified pairs and, in addition, we checked that P. falciparum genes were associated with the same yeast genes independently of the data sets considered (for example in LR-GA versus BO-GA or BO-GA versus BO-SP).
Besides, the data sets considered for training, cover all data range.
We conducted log-likelihood and perplexity analysis by experimenting on all the six data sets considered for evaluation.
In a given Pfam family, if a single BRP derived from seed sequence data set does not have >= 50% coverage, the full sequence data set was considered for generating profiles.
For validation of our potential marker sets, only real marker genes that were also found on the microarray of each data set were considered for the validation.
Finally, the identical imaging parameters were set and considered for the 6-month follow-up DSA control.
To minimize the inclusion of intronic sequence, only extensions <1 kb away from the primary annotated probe <span class="lh">set were considered for motif counting.
In the case of the dataset 'Jena', a number m of 7,768 probe sets was considered, for 'Berlin' 5,159 probe sets, for 'Leipzig' 8,539 probe sets, and for 'Total' 4,982 probe sets.
The same set is considered for each radar, i.e., Ω l is actually independent of the index l (and indeed we will be denoting it by Ω in the following).
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