Sentence examples for series of alignments from inspiring English sources
The alignment was ordered from the most highly varied sites to the most conserved sites, and a series of alignments was generated by successively shortening the OV-sorted alignment in steps of 250 sites.
The most prevalent algorithms are based on the progressive alignment (Feng and Doolittle, 1987) technique, which builds the MSA via a series of pairwise alignments of sequences and partial alignments along the branches of a guide tree.
Therefore, the n-, h-, and c-regions of the signal peptides from the amino acid sequences from both training sets were first extracted manually, and were used to create a series of ungapped alignments which were aligned at: (1) the N-terminus; (2) the h-region start; (3) the c-region start; and (4) the putative cleavage site.
TBA runs a series of blastz alignments (i.e., pairwise sequence alignment) between the genome sequences for each isolate.
A multiple sequence alignment is built up gradually using a series of pairwise alignments, following the branching order in a phylogenetic tree.
We present the results of tests whereby we generated a series of structure alignments based on varying points of reference upon which the alignment calculations were based, and we present a web server, which allows the user to input sets of protein structure segments and to specify a point in space to be used for structure-based alignment calculations.
This produced a series of shortened alignments.
MCM outputs a series of Mauve alignments, each representing an iteration of the reordering.
All sequences obtained as described above were subjected to a series of CLUSTALW alignments.
Isoform reconstruction (alignment assembly) as performed by PASA is strictly an exercise in dynamic programming to chain (assemble) together a compatible series of whole transcript alignments such that each alignment is found within a maximal chain of compatible alignments [ 5].
Multiple alignment is more accurate than a series of pair-wise alignments and this allows for Sn to be extended to include additional fully conserved residues.
