RNA used for hypoxia transcriptome sequencing was extracted from the whole brain.
The genomic DNA used for de novo sequencing is extracted from the clean shoots of N. nucifera.
Codon 1, 2 and 1+2 sequences were extracted from CDS alignments and used as input for building trees, along with protein and CDS sequences.
Representative sequences were extracted from each mPing subtype and aligned with four canonical defined mPing subtypes (mPingA, mPingB, mPingC, and mPingD) from the prior study5 using MUSCLE v3.8.42545 with default parameters (-maxiters 16).
Four sequences were extracted from GivenImaging capsule videos [4].
Candidate sequences were extracted from the 50 most highly upregulated genes from the microarray analyses.
The nucleotide and amino acid sequences were extracted from the National Center for Biotechnology Information (NCBI) nucleotide sequence and amino acid database (http://www.ncbi.nlm.nih.gov/Genbank/index.html).html
The real video test sequences were extracted from some featured episodes of a well-known situation comedy with the resolution of pixels.
TF sequences were extracted from version 1 of the Plant Transcription Factor Database (Riano-Pachon, Ruzicic, Dreyer, and Mueller-Roeber, 2007; Perez-Rodriguez et al., 2010).
Only continuous sequences were extracted from genomes.
