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Sequences were retrieved from the Ensembl database65.
The corresponding amino acid sequences were retrieved from the Arabidopsis Information Resource database (TAIR; http://www.arabidopsis.org) for further phylogenetic analyses.
Interestingly, ample nod sequences were retrieved from the highly reduced core of an anoxic BTEX plume82 for which high abundance of tmoA genes had previously been revealed83.
SSR primer sequences were retrieved from Gramene (http://www.gramene.org).org
Primer sequences were retrieved from the Gramene database (http://www.gramene.org).org
Seventy cupin sequences were retrieved from the genome sequence of O. sativa cv.
Bacterial SSU rRNA sequences were retrieved from RDP-II [22].
Mammalian RNase ZL gene sequences were retrieved from Ensembl [35].
The protein sequences were retrieved from the NCBI protein database.
Protein sequences were retrieved from Uniprot for the siftalign program.
Amino acid sequences were retrieved from NCBI databases.
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