Many novel independent sequences were recovered with moderate affinity and high specificity for ATP, validating this scaffold for the generation of functional molecules.
Top 700 for PpCSP1 and 600 for Lin28 hit sequences were recovered and aligned using MAFFT68 with the einsi option through http://moss.nibb.ac.jp/cgi-bin/selectNalign and a preliminary tree was drawn with http://moss.nibb.ac.jp/cgi-bin/makenjtree.
An amount of 17 and 20 clone sequences were recovered from the fungi Nigrospora and Arthopyrenia, respectively.
Eight peptide sequences were recovered from the reanalysis of the Brachylophosaurus femur, with two of the same sequences recovered in both the 2009 and 2017 study, showing that these results are reproducible.
Seven distinct prey DNA sequences were recovered (Table 4 and Table S3).
Only three unique sequences were recovered, each differing by a single nucleotide (Online Figure S4).
PMMoV RNA sequences were recovered from twelve (57%) of the twenty-one pepper- or spice-containing food products (Table 1).
Three PSI-BLAST iterations were conducted with an expectation value threshold set such that all previously identified sequences were recovered.
The amino acid sequences were recovered from the resulting sets of ROSETTA-designed PDB files, and aligned.
After aligning representatives of each OTU using the Aligner tool provided by the SILVA database [61], we found that only uncultivated sequences were recovered as nearest neighbours.
With the D. melanogaster genome sequence, four "knowledge-based" consensuses were retrieved intact by GROUPER only, and nine such sequences were recovered by RECON only (Figure 2 A).
