Exact(45)
Nine partial sequences were estimated from the two bands.
Genetic distances between orthologous tracts (i.e., LTRs and non-repeat flanking sequences) were estimated using the Kimura 2 parameters method (Kimura 1980) as implemented in the program "Distmat" (EMBOSS package Rice et al. 2000).
Together, large rRNA and 5S rRNA sequences were estimated to amount to 16.3 Mb.
Synonymous and non-synonymous differences between sequences were estimated using the DnDscan method [21] and presented and graphed using EXCEL.
The AA node sequences were estimated on this tree by applying an extended maximum parsimony method which reduces uncertainty due to convergent evolution [35].
The ages of the different sequences were estimated according to radiocarbon dates or precise stratigraphic information (49 and 25 sequences, respectively).
Similar(15)
Besides, +F implies that the equilibrium base frequencies in the sequences are estimated by observing the occurrence in the data.
Next, the relatedness among the input sequences is estimated using the phylogenetic inference method with a suitable substitution model.
The diversity of humpback whale mtDNA sequences was estimated at both the haplotype and nucleotide level [59] using Arlequin 3.11 [60].
To take into account the base composition of the promoters a background model from a relevant set of sequences is estimated.
The genetic distance between sequences was estimated by PROTDIST under JTT amino acid substitution model.
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