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The user provides a set of sequences, to which the NCBI BLAST tool [16] associates a set of similar sequences.
Comparable results were observed for P160 peptide sequences, to which different peptides had increased binding, with an up to 3-fold increase relative to the native P160 peptide.
We will then study those sequences to which are potentially results of a microbe transfer across environments.
The binding preference of a known transcription factor can be described by the sequences to which it binds.
The data were searched against the protein database of Xanthomonas campestris pv vesicatoria 85-10 (Ncontainingining 4411 sequences to which the longest possible ORF for XopD was added (Figure 1C).
In addition, we performed RT-PCRs using primers to human TSHα promoter sequences to which TR and other co-factors do not bind as well as to internal luciferase cDNA sequences.
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To further address this issue we synthesized a D2 reference sequence to which we realigned the D2 reads.
HOMD provides the clone sequences preliminarily aligned to the reference sequence to which the clones belong.
The specific target DNA sequence to which NRs bind is called a hormone response element (HRE).
In contrast, the RNA sequence to which the bacterial protein binds has been clearly identified.
* The sequence to which amino acid residues reported correspond is given for each lineage.
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