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However, the relatively high Ka/Ks value of the two chimpanzee mtDNA sequences that exhibit a coalescence age of 300 ky ago implies sluggishness of purifying selection (Figure 1).
koppenhoeferi sequences that exhibit no similarity to any gene or gene product in current databases.
To this point, we have identified upstream, non-coding sequences that exhibit elevated conservation scores and transcription start sites.
Using phylogenetic shadowing, we identified five cichlid opsins with promoter sequences that exhibit significant divergence in their binding site profiles for 12 transcription factors.
Our data model makes it possible to describe Minimal Aptamers, which are sub-sequences or variants of larger sequences that exhibit binding to a target ligand.
This table also enumerates detection levels of additional off-target sequences that exhibit a consistently low percentage of sites above the detection threshold.
Similar(38)
The strong signal was expected to contain short 17 25 nt sequences that exhibited a stable 5'-end and significant length heterogeneity at the 3'-end.
We searched all contigs against several vertebrate databases to identify sequences that exhibited significant sequence similarity.
For each alignment, pairwise distances among sequences were calculated to identify sequences that exhibited unusually high divergences, which were removed.
Sequences that exhibited more than 80% identity over total large sequence were considered identical or closely related and were assigned to a specific group.
However, we removed from our analysis sequences that exhibited signs of gene conversion or recombination (see Additional file 3) – events that might indicate polysomic rather than disomic inheritance.
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