Exact(1)
This type represents probe sequences that detect a monomorphic locus or loci.
Similar(59)
Only those sequences that detected members of the same family represented by the original query sequence were retained as putative orthologs for those families.
Reverse transcribed RNA was amplified with the VctF primer, as above, and the reverse primer 11R complementary to an exon 11 sequence, that detects both cis- and trans-spliced products.
At the heart of Ion Torrent's machine are sequencing chips that detect DNA sequences electronically.
They used two independent approaches to detect segmental duplications: WGAC (whole-genome assembly comparison), which is a BLAST-based analysis of all assembled sequence that detects self alignments (>90% and 1 kb); and WSSD (whole-genome shotgun sequence detection), which is an assembly-independent approach that examines the reference sequence for an increase in WGS read depth-of-coverage.
However, this approach can be adapted to other sequencing methods that detect specific SNPs and allow for quantitative determinations at SNP positions.
Sequence information alone may be sufficient to consider a gene to be of interest, because sequence comparison tools that detect protein sequence similarity to previously studied genes often allow a related function to be inferred.
More recently, Volik et al. [ 15] proposed a procedure based on paired-end sequences that can detect much smaller variants, depending upon the type of sequence insert one employs.
Primer sets that detect sequences further upstream of −2.3.kb and downstream of exon 3 did not detect any enrichment of H3 acetylation (data not shown).
Of the 37 previously-undocumented allele sequences that were detected, 19 were classified as nominal allele variant sequences.
LM-PCR amplified DNA was verified to be enriched for target sequences that were detected by ChIP.
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